| Number | Authors | Titles |
| 5 | Jiangyong Wei, Tianshou Zhou and Tianhai Tian | SCOUT: A new algorithm for the inference of pseudo-time trajectory using single-cell data |
| 9 | Audrey Legendre, Eric Angel and Fariza Tahi | RCPred: RNA Complex Prediction as a constrained maximum weight clique problem |
| 18 | Petronela Buiga, Ari Elson, Lydia Tabernero and Jean-Marc Schwartz | Modelling the role of dual specificity phosphatases in Herceptin resistant breast cancer cell lines |
| 19 | Xiujuan Lei, Ming Fang, Ling Guo and Fang-Xiang Wu | Protein complex detection based on flower pollination mechanism in multi-relation reconstructed dynamic protein networks |
| 20 | Pawel Gorecki, Oliver Eulenstein and Jerzy Tiuryn | The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost |
| 21 | Melissa Grueter, Kalani Duran, Ramya Ramalingam and Ran Libeskind-Hadas | Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model |
| 23 | Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang and Bo Liu | deGSM: memory scalable construction of large scale de Bruijn Graph |
| 24 | Qi Tian, Jianxiao Zou, Shicai Fan, Jianxiong Tang, Yuan Fang and Zhongli Yu | MRCNN: A deep learning model for regression of genome-wide DNA methylation |
| 25 | Risa Kawaguchi, Hisanori Kiryu, Junichi Iwakiri and Jun Sese | reactIDR: Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification |
| 26 | Kishan K C, Rui Li, Feng Cui and Anne Haake | GNE: A deep learning framework for gene network inference by aggregating biological information |
| 29 | Qijin Yin, Mengmeng Wu, Hairong Lv and Rui Jiang | DeepHistone: a deep learning approach to predicting histone modifications |
| 30 | Aldo Guzmán-Sáenz, Niina Haiminen, Saugata Basu and Laxmi Parida | Signal Enrichment of Metagenome Sequencing Reads using Topological Data Analysis |
| 31 | Wenting Liu and Jagath Rajapakse | Fusing Gene Expression and Transitive Protein-Protein Interaction for Gene Regulatory Networks |
| 33 | Xiaoying Li, Yaping Lin, Changlong Gu and Jialiang Yang | FCMDAP: Using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs |
| 34 | Hansheng Xue, Xuequn Shang and Jiajie Peng | Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO |
| 38 | Yuanyu He, Yaping Lin and Tuanfei Zhu | A class imbalance-aware Relief algorithm for the classification of tumors using microarray gene expression data |
| 41 | Guangsheng Wu, Juan Liu and Xiang Yue | Prediction of drug-disease associations based on ensemble meta paths and singular value decomposition |
| 46 | Ran Li, Xiangrui Zeng, Stephanie Siegmund, Ruogu Lin, Bo Zhou, Chang Liu, Kaiwen Wang, Rui Jiang, Zachary Freyberg, Hairong Lv and Min Xu | Automatic Localization and Identification of Mitochondria in Cellular Electron Cryo-Tomography using Faster-RCNN |
| 49 | Nayang Shan, Zuoheng Wang and Lin Hou | Identification of trans-eQTLs using mediation analysis with multiple mediators |
| 53 | Bipasa Biswas and Yinglei Lai | A Distance-type Measure Approach to the Analysis of Copy Number Variation in DNA Sequencing Data |
| 54 | Nan Du, Jiao Chen and Yanni Sun | Improving the sensitivity of detecting long read overlaps using grouped short k-mer matches |
| 56 | Jiaying You, Pingzhao Hu and Robert McLeod | Predicting Drug-Target Interaction Network Using Deep Learning Model |
| 62 | Inkyung Jung, Hyunwoong Kim, Dongchan Yang and Jayoung Ryu | A new class of super-enhancers associated with fast recovery of 3D chromatin loops |
| 67 | Xiaoxin Ye and Joshua Ho | Ultrafast clustering of single-cell flow cytometry data using FlowGrid |
| 73 | Yasuo Tabei, Masaaki Kotera, Ryusuke Sawada and Yoshihiro Yamanishi | Network-based characterization of drug-protein interaction signatures with a space-efficient approach |
| 79 | Jingli Wu, Qirong Cai, Jinyan Wang and Yuanxiu Liao | Identifying Mutated Driver Pathways in Cancer by Integrating Multi-Omics Data |
| 80 | Ko Abe, Masaaki Hirayama, Kinji Ohno and Teppei Shimamura | ENIGMA: An Enterotype-Like Unigram Mixture Model for Microbial Association Analysis |
| 84 | Shaokun An, Lin Wan and Liang Ma | TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data |
| 86 | Kui Hua and Xuegong Zhang | Estimating the Total Genome Length of a Metagenomic Sample Using K-mers |
| 87 | Shanshan Ren, Nauman Ahmed, Koen Bertels and Zaid Al-Ars | GPU Accelerated Sequence Alignment with Traceback for GATK HaplotypeCaller |
| 89 | Cui Su, Jun Pang and Soumya Paul | Towards Optimal Decomposition of Boolean Networks |
| 100 | Lunfei Liu, Wenting Liu, Yuxin Zheng, Jisu Chen, Jiong Zhou, Huatuo Dai, Suiqing Cai, Jianjun Liu, Min Zheng and Yunqing Ren | Anti-TNF-α Treatment-related Pathways and Biomarkers Revealed by Transcriptome Analysis in Chinese Psoriasis Patients |
| 104 | Haoxing Du, Yi Sheng Ong, Marina Knittel, Ross Mawhorter, Ivy Liu, Gianluca Gross, Reiko Tojo, Ran Libeskind-Hadas and Yi-Chieh Wu | Multiple Optimal Reconciliations under the Duplication-Loss-Coalescence Model |
| 108 | Safa Jammali, Jean-David Aguilar, Esaie Kuitche Kamela and Aïda Ouangraoua | SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups |
| 109 | Dongmei Ai, Xiaoxin Li, Hongfei Pan and Li Xia | Extending Liquid Association to Explore Mediated Co-varying Dynamics in Marine Microbial Community |
| 113 | Yue Zhang, Chunfang Zheng, Sindeed Islam, Yong-Min Kim and David Sankoff | Branching out to Speciation with a Birth-and-Death Model of Fractionation: the Malvaceae |
| 117 | Tom Hartmann, Max Bannach and Martin Middendorf | Sorting Signed Permutations by Inverse Tandem Duplication Random Losses |
| 124 | Yanlin Zhang, Weiwei Liu, Yu Lin, Yen Kaow Ng and Shuaicheng Li | Large-Scale 3D Chromatin Reconstruction From Chromosomal Contacts |
| 126 | Kang Ning and Pengshuo Yang | Meta-Network: Optimized species-species network analysis for microbial communities |
| 127 | Yangjing Gan, Yi Rong, Fei Huang, Lun Hu, Xiaohan Yu, Pengfei Duan, Shengwu Xiong, Haiping Liu, Jing Peng and Yuan Xiaohui | Automatic Hierarchy Classification in Venation Networks using Directional Morphological Filtering for Hierarchical Structure Traits Extraction |
| 129 | Zhang Xia, Gan Yanglan, Zou Guobing, Guan Jihong and Zhou Shuigeng | Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues |
| 134 | Binh P. Nguyen and Nguyen-Quoc-Khanh Le | Prediction of FMN Binding Sites in Electron Transport Chain based on 2-D CNN and PSSM Profiles |
| 139 | Djordje Djordjevic, Joshua Tang, Yun Xin Chen, Shu Lun Shannon Kwan, Raymond Ling, Gordon Qian, Chelsea Woo, Samuel Ellis and Joshua Ho | Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus |
| 140 | Dongbo Bu, Chao Wang, Haicang Zhang, Shiwei Sun, Yi Wei and Wei-Mou Zheng | Constructing optimal energy functions for protein structure prediction using reverse Monte Carlo sampling |
| 141 | Sungjoon Park, Minsu Kim, Seokjun Seo, Seungwan Hong, Kyoohyung Han, Keewoo Lee, Jung Hee Cheon and Sun Kim | A Secure SNP Panel Scheme using Homomorphically Encrypted K-mers without SNP Calling on the User Side |
| 143 | Pritha Dutta, Lichun Ma, Yusuf Ali, Peter M.A. Sloot and Jie Zheng | Boolean Network Modeling of β-cell Apoptosis and Insulin Resistance in Type 2 Diabetes Mellitus |
| 145 | Dongbo Bu, Jingwei Zhang, Shiwei Sun, Yaojun Wang, Chuncui Huang, Yan Li, Jinyu Zhou, Hui Wang and Fusong Ju | De Novo glycan structural identification from mass spectra using tree merging strategy |
| 146 | Shiquan Sun, Yabo Chen, Yang Liu and Xuequn Shang | A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data |
| 148 | Yangyang Hao, Quan-Yang Duh, Richard Kloos, Joshua Babiarz, R. Mack Harrell, S. Thomas Traweek, Su Yeon Kim, Grazyna Fedorowicz, P. Sean Walsh, Peter Sadow, Jing Huang and Giulia Kennedy | Identification of Hürthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms |
| 149 | Quan Chen and Jun Zhu | Detecting Virus-specific Effects on Post-infection Temporal Gene Expression |
| 150 | Wenhao Qian, Ting Ma, Mao Ye, Zhiyao Li, Yuanhua Liu and Pei Hao | Microbiota in the Apical Root Canal System of Tooth with Apical Perodontitis |