Datasets:   Datasets collection in AraENCODE

Genes list:   Search index in AraENCODE

Genome:   Genome used by AraENCODE

3D Genome results:   Interaction pairs, matrices, loops and eigenvectors in AraENCODE

ChIP-Seq results:   Peaks files for search module and BigWig files for browser module in AraENCODE

ATAC-Seq / MNase-Seq results:   Peaks files for search module and BigWig files for browser module in AraENCODE

RNA-Seq results:   Gene expression (TPM) files for Transcriptome module and BigWig files for browser module in AraENCODE

Chromatin states:   Chromatin state tracks for browser module in AraENCODE

Bisulfite-Seq results:   Methylation tracks for browser module in AraENCODE

Transposable Elements:   TAIR10 transposable elements (collected from TAIR)

SNPs:   SNPs of Arabidopsis (collected from 1001 Genomes)

QTLs:   Multi-omics associations of Arabidopsis (collected from AtMAD)

CRMs:   Cis-Regulatory Modules of Arabidopsis (collected from ReMap)

Enhancers:   Genomic positions of enhancers in Arabidopsis thaliana (collected from (Bo Zhu et al. 2015) (Hainan Zhao et al. 2022)))

TFBSs:   JASPAR TFBS predictions (collected from JASPAR)

Dataset Download

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