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Datasets Datasets collection in AraENCODE

Genes list Search index in AraENCODE

Genome Genome used by AraENCODE

3D Genome results Interaction pairs, matrixes, loops and eigenvectors in AraENCODE

ChIP-Seq results Peaks files for search module and BigWig files for browser module in AraENCODE

ATAC-Seq, MNase-Seq results Peaks files for search module and BigWig files for browser module in AraENCODE

RNA-Seq results Gene expression (TPM) files for Transciptom module and BigWig files for browser module in AraENCODE

Chromatin states Chromatin states tracks for browser module in AT-ENCOD

Bisulfite-Seq results Methylation tracks for browser module in AraENCODE

Transposable Elements TAIR10 transposable elements (collected from TAIR)

SNPs SNPs of Arabidopsis (collected from 1001 Genomes)

QTLs Multi-omics association of Arabidopsis (collected from AtMAD)

CRMs Cis Regulatory Module of Arabidopsis (collected from ReMap)

enhancers Genomic positions of Enhancers in Arabidopsis thaliana (collected from (Bo Zhu et al. 2015) (Hainan Zhao et al. 2022))

TFBSs JASPAR TFBS predictions (collected from JASPAR)